NeuroQP
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Open neuroqp.com/try on a computer to set up images and check the atlas fit.

Grayscale coronal mouse brain slice
Your slice
Brain atlas outlines fitted to a microscopy image
Atlas registration
Detected cells marked in cyan on a microscopy image
Cell detection
Cells classified into green and orange populations
Cell classification

Explore results

Cell positions on a brain atlas
Cell positions
Cell density on a brain atlas
Cell density
Anatomy on a brain atlas
Anatomy
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