NeuroQP Docs

Using the Results Table

The Results Table gives you a structured summary of the selected staining and model across animals and brain regions.

It is designed for comparing summarized measurements, not for inspecting individual cells.

What each row represents

Each row represents one animal and brain-region combination for the selected analysis output.

Depending on your study setup, the table can also include group, condition, and sex metadata.

Metrics depend on workflow

Cell counting and classification projects

Commonly useful measures include:

  • Total Cells for the shared detected cell population
  • ON Cells for marker-positive cells
  • OFF Cells for marker-negative cells
  • % ON for the marker-positive proportion
  • Cells/mm2 and ON Cells/mm2 for density

Independent-detection projects

Independent-detection projects do not have a shared all-cell denominator.

For these projects, focus on:

  • marker-positive cells
  • analyzed area
  • marker-positive cells/mm2

Metrics such as % ON, OFF cells, and all-cell density are not meaningful because OFF means rejected candidate rather than biological marker-negative cell.

Filter before you compare

The table is most useful when narrowed to the subset that matches your question.

You can filter by brain region, animal, group, condition, and sex.

Exporting your data

The Results Table can be exported for downstream analysis and figure preparation.

Available formats include CSV, Excel, and GraphPad Prism.

Before exporting, apply the same filters you want to use downstream.