Neuro QP Docs

Study setup overview

Study setup defines how your project data is organized and how Neuro QP interprets uploads and statistics.

Think of it as the foundation for all later steps:

  • Uploads: Filenames are matched against your configured animals and stainings
  • Validation: Missing required setup items are flagged early
  • Statistics: Grouping and filtering options depend on your configured metadata

To avoid rework, configure Study setup in this order:

  1. Experiment metadata
  2. Stainings
  3. Groups and conditions
  4. Animals
  5. Brain regions

Minimum checklist

Before moving to full data analysis, make sure you have:

  • At least one additional staining beyond DAPI
  • At least one animal
  • At least one brain region
  • If groups are enabled: At least one group
  • If conditions are enabled: At least two conditions

Use the Study validation panel as a quick guide for what to configure next.

You can update Study setup later. If you change it after data upload, review assignments to keep your project consistent.