Managing uploaded data

After upload, use the Data view to review quality, correct metadata, and keep analysis-ready slices organized.

Interpret slice cards

Each slice card shows:

• Animal, slice name, and AP coordinate
• Processing status for atlas registration and cell detection
• Image slots for DAPI 4x, DAPI 20x, and 20x stainings, colored with the color you specified in the Study Stainings section.

A successful cell detection status may show the detected cell count directly on the slice.

Edit metadata and image assignments

You can correct metadata directly in Data view:

• Click to edit Animal, Slice name, and AP coordinate
• Open image edit and update Staining or Magnification
• Upload into missing slots from placeholder tiles

If a slot is replaced later, dependent derived outputs may be recomputed for that slice.

Search, filter, and sort

Use filters and sort controls to find slices quickly:

• Animal, slice name, AP range
• Issues that need to be resolved like missing stainings
• Slices that were flagged manually like Ignored for processing or Needs attention

Curation flags

Ignore processing

Marks a slice to be excluded from statistics/processing outputs.

Use this for damaged or out-of-scope slices you want to keep in the project record but exclude from analysis.

Needs attention

Marks slices that require follow-up, for example quality review or re-upload. It su an comment field to keep track of the issue internally.

Use this for collaboration and rework tracking.

Deleting data

You can delete:

• Individual images
• Entire slices (including all associated images)